We are unable to draw your results. We are being notified of the problem, and we will address it as soon as possible. Thank you for your understanding.
Sending details to the GeneMANIA team...
Sent details to the GeneMANIA team
Could not send details to the GeneMANIA team; please send an email to the GeneMANIA team detailing your query
Altered mRNA expression of genes related to nerve cell activity in the fracture callus of older rats: A randomized, controlled, microarray study. Meyer et al. (2004). BMC Musculoskelet Disord.
Source: Pearson correlation with 130,459 interactions from GEO
Tags:
Circadian variations in gene expression in rat abdominal adipose tissue and relationship to physiology. Sukumaran et al. (2010). Physiol Genomics.
Source: Pearson correlation with 287,516 interactions from GEO
Tags:
Multiple chronic pain states are associated with a common amino acid-changing allele in KCNS1. Costigan et al. (2010). Brain.
Source: Pearson correlation with 132,538 interactions from GEO
Tags:
Pooling samples within microarray studies: a comparative analysis of rat liver transcription response to prototypical toxicants. Jolly et al. (2005). Physiol Genomics.
Source: Pearson correlation with 128,205 interactions from GEO
Tags:
Organ-specific expression profiles of rat mammary gland, liver, and lung tissues treated with targretin, 9-cis retinoic acid, and 4-hydroxyphenylretinamide. Wang et al. (2006). Mol Cancer Ther.
Source: Pearson correlation with 128,671 interactions from GEO
Tags:
Serial transplantation of NMU-induced rat mammary tumors: a model of human breast cancer progression. Chan et al. (2007). Int J Cancer.
Source: Pearson correlation with 195,405 interactions from GEO
Tags:
Identification of a core set of genes that signifies pathways underlying cardiac hypertrophy. Strøm et al. (2004). Comp Funct Genomics.
Source: Pearson correlation with 109,551 interactions from GEO
Comprehensive gene expression profiling of rat lung reveals distinct acute and chronic responses to cigarette smoke inhalation. Stevenson et al. (2007). Am J Physiol Lung Cell Mol Physiol.
Source: Pearson correlation with 143,762 interactions from GEO
Tags:
Characterization of an acute molecular marker of nongenotoxic rodent hepatocarcinogenesis by gene expression profiling in a long term clofibric acid study. Michel et al. (2005). Chem Res Toxicol.
Source: Pearson correlation with 241,831 interactions from GEO
Tags:
Gene expression analysis of hepatic roles in cause and development of diabetes in Goto-Kakizaki rats. Almon et al. (2009). J Endocrinol.
Note: One of 3 datasets produced from this publication.
Source: Pearson correlation with 304,795 interactions from GEO
Tags:
Comparison of hepatocarcinogen-induced gene expression profiles in conventional primary rat hepatocytes with in vivo rat liver. Doktorova et al. (2012). Arch Toxicol.
Source: Pearson correlation with 251,631 interactions from GEO
Multi-tissue, selective PPAR? modulation of insulin sensitivity and metabolic pathways in obese rats. Hsiao et al. (2011). Am J Physiol Endocrinol Metab.
Source: Pearson correlation with 214,587 interactions from GEO
Tags:
Gene expression analysis of hepatic roles in cause and development of diabetes in Goto-Kakizaki rats. Almon et al. (2009). J Endocrinol.
Note: One of 3 datasets produced from this publication.
Source: Pearson correlation with 281,119 interactions from GEO
Tags:
Gene expression analysis of hepatic roles in cause and development of diabetes in Goto-Kakizaki rats. Almon et al. (2009). J Endocrinol.
Note: One of 3 datasets produced from this publication.
Source: Pearson correlation with 279,281 interactions from GEO
Tags:
On the utility of pooling biological samples in microarray experiments. Kendziorski et al. (2005). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 230,073 interactions from GEO
Tags:
Genomic-derived markers for early detection of calcineurin inhibitor immunosuppressant-mediated nephrotoxicity. Cui et al. (2011). Toxicol Sci.
Source: Pearson correlation with 266,081 interactions from GEO
Tags:
Homeorhetic adaptation to lactation: comparative transcriptome analysis of mammary, liver, and adipose tissue during the transition from pregnancy to lactation in rats. Patel et al. (2011). Funct Integr Genomics.
Source: Pearson correlation with 282,374 interactions from GEO
Tags:
Endoplasmic reticulum stress responses differ in meninges and associated vasculature, striatum, and parietal cortex after a neurotoxic amphetamine exposure. Thomas et al. (2010). Synapse.
Source: Pearson correlation with 204,142 interactions from GEO
Tags:
An integrated functional genomic study of acute phenobarbital exposure in the rat. Waterman et al. (2010). BMC Genomics.
Source: Pearson correlation with 147,185 interactions from GEO
Tags:
Temporal profiling of the transcriptional basis for the development of corticosteroid-induced insulin resistance in rat muscle. Almon et al. (2005). J Endocrinol.
Source: Pearson correlation with 119,345 interactions from GEO
Tags:
Applications of a rat multiple tissue gene expression data set. Walker et al. (2004). Genome Res.
Source: Pearson correlation with 204,964 interactions from GEO
Tags:
Source: Direct interaction with 57 interactions from Pathway Commons
Source: Direct interaction with 712 interactions from iRefIndex
Source: Direct interaction with 545 interactions from iRefIndex
Source: Direct interaction with 490 interactions from BioGRID
Source: Direct interaction with 1,202 interactions from iRefIndex
Source: Direct interaction with 102 interactions from iRefIndex
Source: Direct interaction with 116 interactions from iRefIndex
Source: Direct interaction with 480 interactions from iRefIndex
Source: Direct interaction with 1,202 interactions from iRefIndex
The SH3 domain of postsynaptic density 95 mediates inflammatory pain through phosphatidylinositol-3-kinase recruitment. Arbuckle et al. (2010). EMBO Rep.
Source: Direct interaction with 200 interactions from iRefIndex
Tags:
Source: Direct interaction with 686 interactions from iRefIndex
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 9 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 218 interactions from I2D
Source: Direct interaction with 13 interactions from I2D
Screening for PTB domain binding partners and ligand specificity using proteome-derived NPXY peptide arrays. Smith et al. (2006). Mol Cell Biol.
Note: I2D predictions of protein protein interactions using Smith-Pawson-2006 Homo sapiens data
Source: Direct interaction with 3 interactions from I2D
Tags:
Cell-specific information processing in segregating populations of Eph receptor ephrin-expressing cells. Jørgensen et al. (2009). Science.
Note: I2D predictions of protein protein interactions using Jorgensen-Pawson-2009 Homo sapiens data
Source: Direct interaction with 394 interactions from I2D
Tags:
Application of an integrated physical and functional screening approach to identify inhibitors of the Wnt pathway. Miller et al. (2009). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using Miller-Attisano-2009 Homo sapiens data
Source: Direct interaction with 193 interactions from I2D
Tags:
Ontological visualization of protein-protein interactions. Drabkin et al. (2005). BMC Bioinformatics.
Note: I2D predictions of protein protein interactions using MGI Mus musculus data
Source: Direct interaction with 286 interactions from I2D
WW domains provide a platform for the assembly of multiprotein networks. Ingham et al. (2005). Mol Cell Biol.
Note: I2D predictions of protein protein interactions using Ingham-Pawson-2005 Homo sapiens data
Source: Direct interaction with 49 interactions from I2D
Tags:
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Saccharomyces cerevisiae data
Source: Direct interaction with 5,224 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 37 interactions from I2D
A quantitative protein interaction network for the ErbB receptors using protein microarrays. Jones et al. (2006). Nature.
Note: I2D predictions of protein protein interactions using Jones-MacBeath-2006 Homo sapiens data
Source: Direct interaction with 49 interactions from I2D
Tags:
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 1,088 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Mus musculus data
Source: Direct interaction with 435 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 405 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Mus musculus data
Source: Direct interaction with 1,911 interactions from I2D
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Mus musculus data
Source: Direct interaction with 110 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Mus musculus data
Source: Direct interaction with 444 interactions from I2D
Development of human protein reference database as an initial platform for approaching systems biology in humans. Peri et al. (2003). Genome Res.
Note: I2D predictions of protein protein interactions using HPRD Homo sapiens data
Source: Direct interaction with 12,907 interactions from I2D
Tags:
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Homo sapiens data
Source: Direct interaction with 8,573 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 5,645 interactions from I2D
Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening. Wu et al. (2007). Proteomics.
Note: I2D predictions of protein protein interactions using Wu-Li-2007 Homo sapiens data
Source: Direct interaction with 170 interactions from I2D
Tags:
Protein interaction mapping: a Drosophila case study. Formstecher et al. (2005). Genome Res.
Note: I2D predictions of protein protein interactions using Formstecher-Daviet-2005 Drosophila melanogaster data
Source: Direct interaction with 187 interactions from I2D
Tags:
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Homo sapiens data
Source: Direct interaction with 1,726 interactions from I2D
InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Lynn et al. (2008). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using INNATEDB Homo sapiens data
Source: Direct interaction with 1,692 interactions from I2D
Tags:
High-quality binary protein interaction map of the yeast interactome network. Yu et al. (2008). Science.
Note: I2D predictions of protein protein interactions using Yu Gold Standard Saccharomyces cerevisiae data
Source: Direct interaction with 189 interactions from I2D
Tags:
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Homo sapiens data
Source: Direct interaction with 7,625 interactions from I2D
InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Lynn et al. (2008). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using INNATEDB Mus musculus data
Source: Direct interaction with 556 interactions from I2D
Tags:
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Caenorhabditis elegans data
Source: Direct interaction with 525 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Drosophila melanogaster data
Source: Direct interaction with 1,478 interactions from I2D
A human MAP kinase interactome. Bandyopadhyay et al. (2010). Nat Methods.
Note: I2D predictions of protein protein interactions using Bandyopadhyay-Ideker-2010 Homo sapiens data
Source: Direct interaction with 590 interactions from I2D
Tags:
A human MAP kinase interactome. Bandyopadhyay et al. (2010). Nat Methods.
Note: I2D predictions of protein protein interactions using Bandyopadhyay-Ideker-2010 Homo sapiens data
Source: Direct interaction with 218 interactions from I2D
Tags:
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Krogan et al. (2006). Nature.
Note: I2D predictions of protein protein interactions using Krogan-Greenblatt-2006 Saccharomyces cerevisiae data
Source: Direct interaction with 554 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Homo sapiens data
Source: Direct interaction with 3,474 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 51 interactions from I2D
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Caenorhabditis elegans data
Source: Direct interaction with 359 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Saccharomyces cerevisiae data
Source: Direct interaction with 730 interactions from I2D
Towards a proteome-scale map of the human protein-protein interaction network. Rual et al. (2005). Nature.
Note: I2D predictions of protein protein interactions using Rual-Vidal-2004 Homo sapiens data
Source: Direct interaction with 142 interactions from I2D
Source: Pearson correlation with 751,333 interactions from InterPro
Source: Pearson correlation with 535,478 interactions from Pfam
splicing factor 3A subunit 3 [Source:RefSeq peptide;Acc:NP_001020869]
Functions:
Synonyms: ENSRNOG00000007629; ENSRNOP00000010373; ENSRNOP00000048606; 313583; Sf3a3; NP_001020869; NM_001025698; LOC313583; LRRGT00093; MGC116354; Sf3a3_predicted;
More at Entrez
splicing factor, arginine/serine-rich 3 [Source:RefSeq peptide;Acc:NP_001041372]
Functions:
Synonyms: ENSRNOG00000000520; ENSRNOP00000000627; ENSRNOP00000046764; 361814; Sfrs3; NP_001041372; NM_001047907; LOC361814; Sfrs3_predicted; Srsf3;
More at Entrez
Heterogeneous nuclear ribonucleoprotein FHeterogeneous nuclear ribonucleoprotein F, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q794E4]
Functions:
Synonyms: ENSRNOG00000014562; ENSRNOP00000019529; 64200; Hnrnpf; NP_001032362; NP_001032363; NP_001032364; NP_071792; NM_001037285; NM_001037286; NM_001037287; NM_022397; Hnrpf; MGC125106; HNRPF_RAT; Q794E4;
More at Entrez
diphthine synthase [Source:RefSeq peptide;Acc:NP_001017449]
Functions:
Synonyms: ENSRNOG00000013719; ENSRNOP00000018367; 295394; Dph5; NP_001017449; NM_001017449; CGI-30; LOC295394_predicted; MGC109155; RGD1307867; RGD1307867_predicted;
More at Entrez
WD repeat domain 43 [Source:RefSeq peptide;Acc:NP_001032880]
Functions:
Synonyms: ENSRNOG00000026316; ENSRNOP00000033485; 362703; Wdr43; NP_001032880; NM_001037791; LOC362703; MGC116335;
More at Entrez
poly [Source:RefSeq peptide;Acc:NP_001099500]
Functions:
Synonyms: ENSRNOG00000008892; ENSRNOP00000011840; 290027; Parp2; NP_001099500; NM_001106030; Adprtl2; Adprtl2_predicted; LOC290027; Parp2_predicted;
More at Entrez
exosome component 7 [Source:RefSeq peptide;Acc:NP_001094195]
Functions:
Synonyms: ENSRNOG00000004413; ENSRNOP00000005975; 316098; Exosc7; NP_001094195; NM_001100725; Exosc7_predicted; LOC316098;
More at Entrez
heterogeneous nuclear ribonucleoprotein H3 [Source:RefSeq peptide;Acc:NP_001102002]
Functions:
Synonyms: ENSRNOG00000026849; ENSRNOP00000029804; 361838; Hnrnph3; NP_001102002; NM_001108532; Hnrph3; Hnrph3_predicted; LOC361838;
More at Entrez
RNA-binding protein with serine-rich domain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYK1]
Functions:
Synonyms: ENSRNOG00000008703; ENSRNOP00000011681; ENSRNOP00000047771; 287113; Rnps1; NP_001011890; NM_001011890; LOC287113; Rnps1_predicted; Q6AYK1; RNPS1_RAT;
More at Entrez
Methylosome protein 50 [Source:UniProtKB/Swiss-Prot;Acc:Q4QR85]
Functions:
Synonyms: ENSRNOG00000016394; ENSRNOP00000022571; 310769; Wdr77; NP_001008771; NM_001008771; LOC310769_predicted; RGD1310479; RGD1310479_predicted; MEP50_RAT; Q4QR85;
More at Entrez
serine/threonine-protein kinase SRPK1 [Source:RefSeq peptide;Acc:NP_001020897]
Functions:
Synonyms: ENSRNOG00000000511; ENSRNOP00000000612; 361811; Srpk1; NP_001020897; NM_001025726; LOC361811; MGC116186; Srpk1_predicted;
More at Entrez
heterogeneous nuclear ribonucleoprotein G [Source:RefSeq peptide;Acc:NP_001020834]
Functions:
Synonyms: ENSRNOG00000000866; ENSRNOP00000001154; 302855; Rbmx; NP_001020834; NM_001025663; hnRNP-G; LOC302855; MGC114544;
More at Entrez
peptidyl-tRNA hydrolase 2, mitochondrial [Source:RefSeq peptide;Acc:NP_001013882]
Functions:
Synonyms: ENSRNOG00000004288; ENSRNOP00000005661; 287593; Ptrh2; NP_001013882; NM_001013860; LOC287593_predicted; RGD1306819; RGD1306819_predicted;
More at Entrez
Nuclear pore complex protein Nup85 [Source:UniProtKB/Swiss-Prot;Acc:Q4QQS8]
Functions:
Synonyms: ENSRNOG00000003673; ENSRNOP00000005035; 287830; Nup85; NP_001020572; NM_001025401; LOC287830; Pcnt1; Pcnt1_predicted; NUP85_RAT; Q4QQS8;
More at Entrez
methionine aminopeptidase 1 [Source:RefSeq peptide;Acc:NP_001099946]
Functions:
Synonyms: ENSRNOG00000012947; ENSRNOP00000017579; 295500; Metap1; NP_001099946; NM_001106476; LOC295500; Metap1_predicted;
More at Entrez
Heterogeneous nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:P84586]
Functions:
Synonyms: ENSRNOG00000012138; ENSRNOP00000016184; 307779; Rbmxrtl; NP_001100890; NM_001107420; LOC307779; Rbmxrt_predicted; HNRPG_RAT; P84586;
More at Entrez
Cyclin-H [Source:UniProtKB/Swiss-Prot;Acc:Q9R1A0]
Functions:
Synonyms: ENSRNOG00000031656; ENSRNOP00000039039; 84389; Ccnh; NP_443213; NM_052981; CCNH_RAT; Q9R1A0;
More at Entrez
zinc finger protein 64 [Source:RefSeq peptide;Acc:NP_001012093]
Functions:
Synonyms: ENSRNOG00000012762; ENSRNOP00000017063; ENSRNOP00000042333; ENSRNOP00000050042; 311661; Zfp64; NP_001012093; NM_001012093; LOC311661; Zfp64_predicted;
More at Entrez
HIV-1 Rev binding protein 2 [Source:RefSeq peptide;Acc:NP_001101564]
Functions:
Synonyms: ENSRNOG00000004035; ENSRNOP00000005384; ENSRNOP00000059249; 314830; Hrb2; NP_001101564; NM_001108094; Hrb2_predicted; LOC314830;
More at Entrez
Serine/arginine-rich splicing factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6PDU1]
Functions:
Synonyms: ENSRNOG00000000248; ENSRNOP00000000265; ENSRNOP00000034926; ENSRNOP00000059012; 494445; Sfrs2; NP_001009720; NM_001009720; MGC73009; Srsf2; Q6PDU1; SRSF2_RAT;
More at Entrez
Mitogen-activated protein kinase 3 [Source:UniProtKB/Swiss-Prot;Acc:P21708]
Functions:
Synonyms: ENSRNOG00000019601; ENSRNOP00000026627; ENSRNOP00000051901; 50689; Mapk3; NP_059043; NM_017347; Erk-1; ERK1; ERT2; Esrk1; MNK1; p44; p44erk1; p44mapk; Prkm3; MK03_RAT; P21708;
More at Entrez
| query genes | n/a | 1 / 1 |
| spliceosomal complex | 5.1E-4 | 5 / 96 |
| mRNA metabolic process | 3.96E-3 | 5 / 166 |
| catalytic step 2 spliceosome | 4.14E-3 | 4 / 73 |
| RNA processing | 6.64E-3 | 5 / 212 |
| mRNA processing | 8.12E-3 | 4 / 98 |
| regulation of mRNA processing | 1.01E-2 | 3 / 30 |
| regulation of RNA splicing | 1.97E-2 | 3 / 41 |
| cellular response to interleukin-1 | 1.97E-2 | 3 / 41 |
| mRNA splice site selection | 8.2E-2 | 2 / 10 |
| response to interleukin-1 | 8.2E-2 | 3 / 69 |
| extracellular organelle | 8.34E-2 | 2 / 11 |
| extracellular membrane-bounded organelle | 8.34E-2 | 2 / 11 |
| nuclear euchromatin | 8.58E-2 | 2 / 12 |
| mRNA binding | 8.58E-2 | 3 / 80 |
| euchromatin | 8.87E-2 | 2 / 13 |
| regulation of alternative nuclear mRNA splicing, via spliceosome | 8.87E-2 | 2 / 13 |
| RNA splicing | 8.99E-2 | 3 / 87 |
3.1.1
19 July 2012 20:00:00
server5.baderlab.med.utoronto.ca:80
server5.baderlab.med.utoronto.ca
192.168.81.45
25 May 2013 23:42:45
CCBot/2.0
192.168.81.45
54.234.42.16
/link
/WEB-INF/jsp/results.jsp
GET
7
313583
AUTOMATIC_SELECT
20
ACC75B4F3A32484E292E69ECC7CFFB87.genemania