Genomic expression programs in the response of yeast cells to environmental changes. Gasch et al. (2000). Mol Biol Cell.
Source: Pearson correlation with 224,669 interactions from supplementary material
Tags:
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Genomic expression programs in the response of yeast cells to environmental changes. Gasch et al. (2000). Mol Biol Cell.
Source: Pearson correlation with 224,669 interactions from supplementary material
Tags:
Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Yvert et al. (2003). Nat Genet.
Source: Pearson correlation with 197,822 interactions from supplementary material
Tags:
Dynamics of oscillatory phenotypes in Saccharomyces?cerevisiae reveal a network of genome-wide transcriptional oscillators. Chin et al. (2012). FEBS J.
Note: One of 3 datasets produced from this publication.
Source: Pearson correlation with 195,567 interactions from GEO
Functional discovery via a compendium of expression profiles. Hughes et al. (2000). Cell.
Source: Pearson correlation with 194,489 interactions from supplementary material
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Roberts et al. (2000). Science.
Source: Pearson correlation with 175,807 interactions from supplementary material
Tags:
Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. Urban et al. (2007). Mol Cell.
Source: Pearson correlation with 181,599 interactions from GEO
Tags:
Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data. Knijnenburg et al. (2009). BMC Genomics.
Source: Pearson correlation with 210,115 interactions from GEO
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Spellman et al. (1998). Mol Biol Cell.
Source: Pearson correlation with 162,296 interactions from supplementary material
Tags:
Novel response to microtubule perturbation in meiosis. Hochwagen et al. (2005). Mol Cell Biol.
Source: Pearson correlation with 165,092 interactions from GEO
Tags:
Transcript and proteomic analyses of wild-type and gpa2 mutant Saccharomyces cerevisiae strains suggest a role for glycolytic carbon source sensing in pseudohyphal differentiation. Medintz et al. (2007). Mol Biosyst.
Source: Pearson correlation with 170,544 interactions from GEO
Tags:
Identifying transcription factor functions and targets by phenotypic activation. Chua et al. (2006). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 124,169 interactions from supplementary material
Tags:
Adaptive prediction of environmental changes by microorganisms. Mitchell et al. (2009). Nature.
Source: Pearson correlation with 183,714 interactions from GEO
Tags:
Global control of cell-cycle transcription by coupled CDK and network oscillators. Orlando et al. (2008). Nature.
Source: Pearson correlation with 182,456 interactions from GEO
Tags:
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Shalem et al. (2008). Mol Syst Biol.
Note: One of 3 datasets produced from this publication.
Source: Pearson correlation with 175,749 interactions from GEO
Linking gene regulation and the exo-metabolome: a comparative transcriptomics approach to identify genes that impact on the production of volatile aroma compounds in yeast. Rossouw et al. (2008). BMC Genomics.
Source: Pearson correlation with 185,228 interactions from GEO
Tags:
Slt2 MAPK pathway is essential for cell integrity in the presence of arsenate. Matia-González et al. (2011). Yeast.
Source: Pearson correlation with 180,834 interactions from GEO
Tags:
Genetic interactions of MAF1 identify a role for Med20 in transcriptional repression of ribosomal protein genes. Willis et al. (2008). PLoS Genet.
Source: Pearson correlation with 138,799 interactions from GEO
Tags:
Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Gasch et al. (2001). Mol Biol Cell.
Source: Pearson correlation with 184,132 interactions from supplementary material
Tags:
Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. Simmons Kovacs et al. (2012). Mol Cell.
Source: Pearson correlation with 183,030 interactions from GEO
Tags:
Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant. Ge et al. (2010). Nucleic Acids Res.
Source: Pearson correlation with 169,936 interactions from GEO
Tags:
Global analysis of protein localization in budding yeast. Huh et al. (2003). Nature.
Source: 904,057 interactions from supplementary material
The genetic landscape of a cell. Costanzo et al. (2010). Science.
Note: The Genetic Landscape of a Cell Correlation matrix of all genetic interaction data produced in this study
Source: 257,575 interactions from supplementary material
A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Krogan et al. (2003). Mol Cell.
Source: Direct interaction with 451 interactions from iRefIndex
Tags:
Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies. Haarer et al. (2007). Genes Dev.
Source: Direct interaction with 182 interactions from iRefIndex
An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae. Lesage et al. (2005). BMC Genet.
Source: Direct interaction with 182 interactions from iRefIndex
Diverse functions of spindle assembly checkpoint genes in Saccharomyces cerevisiae. Daniel et al. (2006). Genetics.
Source: Direct interaction with 157 interactions from iRefIndex
Tags:
Genome-wide association data reveal a global map of genetic interactions among protein complexes. Hannum et al. (2009). PLoS Genet.
Source: Direct interaction with 396 interactions from iRefIndex
A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking. Aguilar et al. (2010). Nat Struct Mol Biol.
Source: Direct interaction with 1,355 interactions from BioGRID
Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. Vizeacoumar et al. (2010). J Cell Biol.
Source: Direct interaction with 144 interactions from iRefIndex
Global mapping of the yeast genetic interaction network. Tong et al. (2004). Science.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 1,945 interactions from BioGRID
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Collins et al. (2007). Nature.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 11,605 interactions from BioGRID
Tags:
Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Jonikas et al. (2009). Science.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 1,172 interactions from BioGRID
Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation. Measday et al. (2005). Proc Natl Acad Sci U S A.
Source: Direct interaction with 162 interactions from iRefIndex
Tags:
Genetic interaction network of the Saccharomyces cerevisiae type 1 phosphatase Glc7. Logan et al. (2008). BMC Genomics.
Source: Direct interaction with 214 interactions from iRefIndex
A robust toolkit for functional profiling of the yeast genome. Pan et al. (2004). Mol Cell.
Source: Direct interaction with 198 interactions from iRefIndex
Source: Direct interaction with 13,124 interactions from iRefIndex
Global mapping of the yeast genetic interaction network. Tong et al. (2004). Science.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 2,054 interactions from BioGRID
Systematic genetic array analysis links the Saccharomyces cerevisiae SAGA/SLIK and NuA4 component Tra1 to multiple cellular processes. Hoke et al. (2008). BMC Genet.
Source: Direct interaction with 109 interactions from iRefIndex
Tags:
Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Jonikas et al. (2009). Science.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 847 interactions from BioGRID
J domain co-chaperone specificity defines the role of BiP during protein translocation. Vembar et al. (2010). J Biol Chem.
Source: Direct interaction with 311 interactions from iRefIndex
Epistatic relationships reveal the functional organization of yeast transcription factors. Zheng et al. (2010). Mol Syst Biol.
Source: Direct interaction with 3,333 interactions from BioGRID
Tags:
Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Schuldiner et al. (2005). Cell.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 2,701 interactions from BioGRID
Functional dissection of the NuA4 histone acetyltransferase reveals its role as a genetic hub and that Eaf1 is essential for complex integrity. Mitchell et al. (2008). Mol Cell Biol.
Source: Direct interaction with 242 interactions from iRefIndex
Tags:
A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Lin et al. (2008). Genes Dev.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 1,593 interactions from BioGRID
Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Dixon et al. (2008). Proc Natl Acad Sci U S A.
Source: Direct interaction with 370 interactions from iRefIndex
The synthetic genetic interaction spectrum of essential genes. Davierwala et al. (2005). Nat Genet.
Source: Direct interaction with 564 interactions from iRefIndex
Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Schuldiner et al. (2005). Cell.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 715 interactions from BioGRID
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Collins et al. (2007). Nature.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 2,806 interactions from BioGRID
Tags:
A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Lin et al. (2008). Genes Dev.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 1,969 interactions from iRefIndex
Alterations in DNA replication and histone levels promote histone gene amplification in Saccharomyces cerevisiae. Libuda et al. (2010). Genetics.
Source: Direct interaction with 269 interactions from iRefIndex
Chemical-genetic profile analysis of five inhibitory compounds in yeast. Alamgir et al. (2010). BMC Chem Biol.
Source: Direct interaction with 103 interactions from iRefIndex
Gene function prediction from congruent synthetic lethal interactions in yeast. Ye et al. (2005). Mol Syst Biol.
Source: Direct interaction with 244 interactions from iRefIndex
Tags:
The genetic landscape of a cell. Costanzo et al. (2010). Science.
Note: The Genetic Landscape of a Cell Negative genetic interaction scores less than -0.08, with a p-value less than 0.05
Source: 103,609 interactions from supplementary material
The genetic landscape of a cell. Costanzo et al. (2010). Science.
Note: The Genetic Landscape of a Cell Positive genetic interaction scores greater than 0.08, with a p-value less than 0.05
Source: 57,182 interactions from supplementary material
Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. Beltrao et al. (2009). PLoS Biol.
Source: Direct interaction with 412 interactions from iRefIndex
Tags:
Annotating novel genes by integrating synthetic lethals and genomic information. Schöner et al. (2008). BMC Syst Biol.
Source: Direct interaction with 250 interactions from iRefIndex
Tags:
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. Lee et al. (2007). PLoS One.
Note: Yeast genetic interactions used in YeastNet
Source: 12,533 interactions from supplementary material
Source: Direct interaction with 26,651 interactions from BioGRID
The genetic landscape of a cell. Costanzo et al. (2010). Science.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 5,646 interactions from BioGRID
A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Wilmes et al. (2008). Mol Cell.
Note: One of 3 datasets produced from this publication.
Source: Direct interaction with 3,803 interactions from BioGRID
The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Hillenmeyer et al. (2008). Science.
Note: Homozygous fitness data One of 2 datasets produced from this publication.
Source: Pearson correlation with 148,490 interactions from collaborator
Tags:
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. Lee et al. (2007). PLoS One.
Note: Co-citation of yeast genes used in YeastNet
Source: 29,461 interactions from supplementary material
The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Hillenmeyer et al. (2008). Science.
Note: Heterozygous fitness data excluding problem batches One of 2 datasets produced from this publication.
Source: Pearson correlation with 201,531 interactions from collaborator
Tags:
Targets of the cyclin-dependent kinase Cdk1. Ubersax et al. (2003). Nature.
Source: Direct interaction with 182 interactions from iRefIndex
Tags:
Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Sanders et al. (2002). Mol Cell Biol.
Source: Direct interaction with 293 interactions from iRefIndex
Tags:
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Grandi et al. (2002). Mol Cell.
Source: Direct interaction with 272 interactions from iRefIndex
Probing the membrane environment of the TOR kinases reveals functional interactions between TORC1, actin, and membrane trafficking in Saccharomyces cerevisiae. Aronova et al. (2007). Mol Biol Cell.
Source: Direct interaction with 110 interactions from iRefIndex
Protein interaction networks by proteome peptide scanning. Landgraf et al. (2004). PLoS Biol.
Source: Direct interaction with 180 interactions from iRefIndex
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Collins et al. (2007). Mol Cell Proteomics.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 3,588 interactions from iRefIndex
A protein interaction map for cell polarity development. Drees et al. (2001). J Cell Biol.
Source: Direct interaction with 172 interactions from iRefIndex
Source: Direct interaction with 14,628 interactions from iRefIndex
Proteome survey reveals modularity of the yeast cell machinery. Gavin et al. (2006). Nature.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 6,531 interactions from BioGRID
Systematic genetic analysis with ordered arrays of yeast deletion mutants. Tong et al. (2001). Science.
Source: Direct interaction with 288 interactions from iRefIndex
Tags:
High-definition macromolecular composition of yeast RNA-processing complexes. Krogan et al. (2004). Mol Cell.
Source: Direct interaction with 633 interactions from iRefIndex
Tags:
Comprehensive analysis of diverse ribonucleoprotein complexes. Oeffinger et al. (2007). Nat Methods.
Source: Direct interaction with 175 interactions from iRefIndex
Tags:
The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin. Müller et al. (2010). Genes Dev.
Source: Direct interaction with 265 interactions from iRefIndex
Tags:
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Collins et al. (2007). Mol Cell Proteomics.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 9,064 interactions from BioGRID
Source: Direct interaction with 155,858 interactions from iRefIndex
Functional organization of the yeast proteome by systematic analysis of protein complexes. Gavin et al. (2002). Nature.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 3,210 interactions from BioGRID
Tags:
Proteomic analysis of nucleoporin interacting proteins. Allen et al. (2001). J Biol Chem.
Source: Direct interaction with 113 interactions from iRefIndex
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. Lee et al. (2007). PLoS One.
Note: Literature curated yeast protein interactions used in YeastNet
Source: 11,713 interactions from supplementary material
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. Tonikian et al. (2009). PLoS Biol.
Source: Direct interaction with 1,199 interactions from iRefIndex
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Tong et al. (2002). Science.
Source: Direct interaction with 422 interactions from iRefIndex
A novel proteomics approach for the discovery of chromatin-associated protein networks. Lambert et al. (2009). Mol Cell Proteomics.
Source: Direct interaction with 203 interactions from iRefIndex
Tags:
A protein interaction map of the mitotic spindle. Wong et al. (2007). Mol Biol Cell.
Source: Direct interaction with 450 interactions from iRefIndex
A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae. Newman et al. (2000). Proc Natl Acad Sci U S A.
Source: Direct interaction with 137 interactions from iRefIndex
Global analysis of protein sumoylation in Saccharomyces cerevisiae. Wohlschlegel et al. (2004). J Biol Chem.
Source: Direct interaction with 210 interactions from iRefIndex
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. Lee et al. (2007). PLoS One.
Note: Yeast protein complexes identified by affinity purification / mass spectrometry used in YeastNet
Source: 31,902 interactions from supplementary material
A global protein kinase and phosphatase interaction network in yeast. Breitkreutz et al. (2010). Science.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 1,874 interactions from iRefIndex
Tags:
An in vivo map of the yeast protein interactome. Tarassov et al. (2008). Science.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 2,394 interactions from BioGRID
Tags:
An in vivo map of the yeast protein interactome. Tarassov et al. (2008). Science.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 9,236 interactions from iRefIndex
Tags:
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Krogan et al. (2006). Nature.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 6,484 interactions from iRefIndex
Source: Direct interaction with 28,343 interactions from BioGRID
Assigning function to yeast proteins by integration of technologies. Hazbun et al. (2003). Mol Cell.
Source: Direct interaction with 2,616 interactions from iRefIndex
Linking functionally related genes by sensitive and quantitative characterization of genetic interaction profiles. Decourty et al. (2008). Proc Natl Acad Sci U S A.
Source: Direct interaction with 121 interactions from iRefIndex
Source: Direct interaction with 8,978 interactions from iRefIndex
A comprehensive two-hybrid analysis to explore the yeast protein interactome. Ito et al. (2001). Proc Natl Acad Sci U S A.
Source: 733 interactions from BioGRID
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Ito et al. (2000). Proc Natl Acad Sci U S A.
Source: Direct interaction with 140 interactions from iRefIndex
Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis. Guerrero et al. (2008). Proc Natl Acad Sci U S A.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 1,199 interactions from BioGRID
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 454 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Mus musculus data
Source: Direct interaction with 135 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 4 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Mus musculus data
Source: Direct interaction with 53 interactions from I2D
InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Lynn et al. (2008). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using INNATEDB Mus musculus data
Source: Direct interaction with 16 interactions from I2D
Tags:
Application of an integrated physical and functional screening approach to identify inhibitors of the Wnt pathway. Miller et al. (2009). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using Miller-Attisano-2009 Homo sapiens data
Source: Direct interaction with 22 interactions from I2D
Tags:
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Homo sapiens data
Source: Direct interaction with 1,488 interactions from I2D
A gene-coexpression network for global discovery of conserved genetic modules. Stuart et al. (2003). Science.
Source: 16,787 interactions from supplementary material
Tags:
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. Lee et al. (2007). PLoS One.
Note: Protein interactions inferred from tertiary structures of protein complexes used in YeastNet
Source: 3,404 interactions from supplementary material
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. Lee et al. (2007). PLoS One.
Note: Bacterial and archaeal gene neighbourhoods mapped to yeast genes
Source: 4,961 interactions from supplementary material
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Mus musculus data
Source: Direct interaction with 3 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Homo sapiens data
Source: Direct interaction with 252 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Homo sapiens data
Source: Direct interaction with 1,465 interactions from I2D
Development of human protein reference database as an initial platform for approaching systems biology in humans. Peri et al. (2003). Genome Res.
Note: I2D predictions of protein protein interactions using HPRD Homo sapiens data
Source: Direct interaction with 1,237 interactions from I2D
Tags:
InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Lynn et al. (2008). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using INNATEDB Homo sapiens data
Source: Direct interaction with 125 interactions from I2D
Tags:
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Homo sapiens data
Source: Direct interaction with 437 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Caenorhabditis elegans data
Source: Direct interaction with 218 interactions from I2D
Towards a proteome-scale map of the human protein-protein interaction network. Rual et al. (2005). Nature.
Note: I2D predictions of protein protein interactions using Rual-Vidal-2004 Homo sapiens data
Source: Direct interaction with 14 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Caenorhabditis elegans data
Source: Direct interaction with 191 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Drosophila melanogaster data
Source: Direct interaction with 608 interactions from I2D
Source: Pearson correlation with 31,294 interactions from Pfam
Source: Pearson correlation with 47,286 interactions from InterPro
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007344]
Functions:
Synonyms: YDR034C-C; 851600; Q12392; YD21A_YEAST;
More at Entrez
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000000525]
Functions:
Synonyms: YCL020W; 850339; P25383; YC21A_YEAST;
More at Entrez
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007379]
Functions:
Synonyms: YLR410W-A; 851127; P0C2J2; P0C2J4; YG21A_YEAST; YL21A_YEAST;
More at Entrez
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007353]
Functions:
Synonyms: YOR192C-A; 854366; Q12439; YO21A_YEAST;
More at Entrez
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007396]
Functions:
Synonyms: YDR261W-A; 851850; Q99303; YD23A_YEAST;
More at Entrez
Protein serine/threonine kinase; regulates the organization and function of the actin cytoskeleton and reduces endocytic ability of cell through the phosphorylation of the Pan1p-Sla1p-End3p protein complex [Source:SGD;Acc:S000001357]
Functions:
Synonyms: YIL095W; 854713; PRK1; P40494; PRK1_YEAST;
Mitogen-activated protein kinase (MAPK) involved in signal transduction pathways that control filamentous growth and pheromone response; the KSS1 gene is nonfunctional in S288C strains and functional in W303 strains [Source:SGD;Acc:S000003272]
Functions:
Synonyms: YGR040W; 852931; KSS1; KSS1_YEAST; P14681;
Nim1p-related protein kinase that regulates the morphogenesis and septin checkpoints; associates with the assembled septin filament; required along with Hsl7p for bud neck recruitment, phosphorylation, and degradation of Swe1p [Source:SGD;Acc:S000001584]
Functions:
Synonyms: YKL101W; 853760; HSL1; ELM2; NIK1; HSL1_YEAST; P34244;
Mitogen-activated serine/threonine protein kinase involved in mating; phosphoactivated by Ste7p; substrates include Ste12p, Far1p, Bni1p, Sst2p; inhibits invasive growth during mating by phosphorylating Tec1p, promoting its degradation [Source:SGD;Acc:S000000112]
Functions:
Synonyms: YBL016W; 852265; FUS3; DAC2; FUS3_YEAST; P16892;
Serine-threonine kinase and endoribonuclease; transmembrane protein that mediates the unfolded protein response (UPR) by regulating Hac1p synthesis through HAC1 mRNA splicing; Kar2p binds inactive Ire1p and releases from it upon ER stress [Source:SGD;Acc:S000001121]
Functions:
Synonyms: YHR079C; 856478; IRE1; ERN1; IRE1_YEAST; P32361;
Ser/thr protein kinase; nuclear translocation required for haploid filamentous growth; regulates filamentous growth induced nuclear translocation of Bcy1p, Fus3p, and Sks1p; overproduction causes allele-specific suppression of prp20-10 [Source:SGD;Acc:S000001124]
Functions:
Synonyms: YHR082C; 856482; KSP1; KSP1_YEAST; P38691;
Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p; also interacts with ARS1 and plays a role in initiation of DNA replication [Source:SGD;Acc:S000006074]
Functions:
Synonyms: YPL153C; 855950; RAD53; LSD1; MEC2; SPK1; P22216; RAD53_YEAST;
Palmitoylated plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck1p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck1p [Source:SGD;Acc:S000005098]
Functions:
Synonyms: YNL154C; 855568; YCK2; KC12_YEAST; P23292;
Protein ser/thr kinase required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; structurally required for phagophore assembly site formation; during autophagy forms a complex with Atg13p and Atg17p [Source:SGD;Acc:S000003148]
Functions:
Synonyms: YGL180W; 852695; ATG1; APG1; AUT3; CVT10; ATG1_YEAST; P53104;
Mitogen-activated protein (MAP) kinase kinase kinase acting in the protein kinase C signaling pathway, which controls cell integrity; upon activation by Pkc1p phosphorylates downstream kinases Mkk1p and Mkk2p [Source:SGD;Acc:S000003631]
Functions:
Synonyms: YJL095W; 853350; BCK1; LAS3; SAP3; SLK1; SSP31; BCK1_YEAST; Q01389;
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007384]
Functions:
Synonyms: YNL054W-A; 855671; Q12470; YN12A_YEAST;
More at Entrez
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007363]
Functions:
Synonyms: YPR158W-A;
More at Ensembl
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007357]
Functions:
Synonyms: YPL257W-A;
More at Ensembl
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007402]
Functions:
Synonyms: YER137C-A;
More at Ensembl
Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [Source:SGD;Acc:S000007359]
Functions:
Synonyms: YPR137C-A;
More at Ensembl
| query genes | n/a | 1 / 1 |
| transposition, RNA-mediated | 1.7E-11 | 11 / 105 |
| transposition | 1.7E-11 | 11 / 108 |
| protein kinase activity | 7.45E-11 | 11 / 129 |
| retrotransposon nucleocapsid | 7.45E-11 | 10 / 89 |
| phosphotransferase activity, alcohol group as acceptor | 1.74E-9 | 11 / 177 |
| kinase activity | 4.72E-9 | 11 / 197 |
| protein phosphorylation | 1.41E-8 | 10 / 157 |
| protein serine/threonine kinase activity | 7.61E-8 | 8 / 83 |
| phosphorylation | 1.23E-7 | 10 / 200 |
| phosphate-containing compound metabolic process | 2.21E-6 | 10 / 274 |
| phosphorus metabolic process | 2.21E-6 | 10 / 274 |
| receptor signaling protein serine/threonine kinase activity | 3.45E-3 | 3 / 12 |
| receptor signaling protein activity | 4.13E-3 | 3 / 13 |
| response to organic substance | 6.16E-2 | 5 / 161 |
3.1.1
19 July 2012 20:00:00
server5.baderlab.med.utoronto.ca:80
server5.baderlab.med.utoronto.ca
192.168.81.45
20 May 2013 01:10:52
CCBot/2.0
192.168.81.45
54.234.180.187
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GET
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CB0A44DBB6FF50807869E6B6A9F16FF1.genemania