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Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number. Wang et al. (2006). Cancer Res.
Source: Pearson correlation with 231,830 interactions from GEO
Tags:
Multiclass cancer diagnosis using tumor gene expression signatures. Ramaswamy et al. (2001). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 226,615 interactions from supplementary material
Tags:
Genomic analysis reveals few genetic alterations in pediatric acute myeloid leukemia. Radtke et al. (2009). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 377,767 interactions from GEO
Tags:
Expression profiling of liposarcoma yields a multigene predictor of patient outcome and identifies genes that contribute to liposarcomagenesis. Gobble et al. (2011). Cancer Res.
Source: Pearson correlation with 449,507 interactions from GEO
Tags:
Gene expression classifiers for relapse-free survival and minimal residual disease improve risk classification and outcome prediction in pediatric B-precursor acute lymphoblastic leukemia. Kang et al. (2010). Blood.
Source: Pearson correlation with 549,783 interactions from GEO
Tags:
A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling. Hummel et al. (2006). N Engl J Med.
Source: Pearson correlation with 466,765 interactions from GEO
Tags:
Gene signatures of progression and metastasis in renal cell cancer. Jones et al. (2005). Clin Cancer Res.
Source: Pearson correlation with 365,428 interactions from GEO
Tags:
Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Bild et al. (2006). Nature.
Note: One of 3 datasets produced from this publication.
Source: Pearson correlation with 254,105 interactions from GEO
Tags:
Regional variation in gene expression in the healthy colon is dysregulated in ulcerative colitis. Noble et al. (2008). Gut.
Source: Pearson correlation with 603,016 interactions from GEO
The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle. Wu et al. (2007). Endocrine.
Source: Pearson correlation with 223,988 interactions from GEO
Tags:
Gene expression analysis of soft tissue sarcomas: characterization and reclassification of malignant fibrous histiocytoma. Nakayama et al. (2007). Mod Pathol.
Source: Pearson correlation with 361,398 interactions from GEO
Tags:
Tumor cell gene expression changes following short-term in vivo exposure to single agent chemotherapeutics are related to survival in multiple myeloma. Burington et al. (2008). Clin Cancer Res.
Source: Pearson correlation with 266,464 interactions from GEO
Tags:
Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells. Burczynski et al. (2006). J Mol Diagn.
Source: Pearson correlation with 419,356 interactions from GEO
Transcriptome signature of resistance exercise adaptations: mixed muscle and fiber type specific profiles in young and old adults. Raue et al. (2012). J Appl Physiol.
Source: Pearson correlation with 483,849 interactions from GEO
Toxicity from radiation therapy associated with abnormal transcriptional responses to DNA damage. Rieger et al. (2004). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 220,846 interactions from GEO
Tags:
Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment. Arijs et al. (2009). PLoS One.
Source: Pearson correlation with 570,210 interactions from GEO
Tags:
Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. Peng et al. (2009). BMC Genomics.
Source: Pearson correlation with 349,954 interactions from GEO
Tags:
Gene expression changes in the course of normal brain aging are sexually dimorphic. Berchtold et al. (2008). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 507,933 interactions from GEO
Tags:
Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis. Toedter et al. (2011). Am J Gastroenterol.
Source: Pearson correlation with 572,082 interactions from GEO
Tags:
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Perou et al. (1999). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 50,804 interactions from supplementary material
Tags:
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Johnson et al. (2003). Science.
Source: Pearson correlation with 426,934 interactions from GEO
Tags:
A comprehensive transcript index of the human genome generated using microarrays and computational approaches. Schadt et al. (2004). Genome Biol.
Note: Predicted transcript array
Source: Pearson correlation with 60,454 interactions from GEO
Source: Direct interaction with 171 interactions from iRefIndex
Source: Direct interaction with 345 interactions from BioGRID
A human functional protein interaction network and its application to cancer data analysis. Wu et al. (2010). Genome Biol.
Source: 78,448 interactions from supplementary material
Tags:
Source: Direct interaction with 24,924 interactions from Pathway Commons
Source: Direct interaction with 937 interactions from Pathway Commons
Source: Direct interaction with 10,118 interactions from Pathway Commons
Source: Direct interaction with 598 interactions from Pathway Commons
Source: Direct interaction with 685 interactions from Pathway Commons
Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes. Behzadnia et al. (2007). EMBO J.
Source: Direct interaction with 101 interactions from iRefIndex
Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. Kneissl et al. (2003). J Mol Biol.
Source: Direct interaction with 83 interactions from iRefIndex
Tags:
Proteomics analysis identifies phosphorylation-dependent alpha-synuclein protein interactions. McFarland et al. (2008). Mol Cell Proteomics.
Source: Direct interaction with 152 interactions from iRefIndex
Tags:
Systematic analysis of human protein complexes identifies chromosome segregation proteins. Hutchins et al. (2010). Science.
Source: Direct interaction with 141 interactions from iRefIndex
Tags:
Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. Jeronimo et al. (2007). Mol Cell.
Source: Direct interaction with 660 interactions from iRefIndex
Tags:
Self-assembling protein microarrays. Ramachandran et al. (2004). Science.
Source: Direct interaction with 119 interactions from iRefIndex
A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein. Goudreault et al. (2009). Mol Cell Proteomics.
Source: Direct interaction with 242 interactions from iRefIndex
Tags:
A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. Sato et al. (2004). Mol Cell.
Source: Direct interaction with 235 interactions from iRefIndex
Tags:
Large-scale structural analysis of the classical human protein tyrosine phosphatome. Barr et al. (2009). Cell.
Source: Direct interaction with 177 interactions from iRefIndex
Source: Direct interaction with 385 interactions from iRefIndex
A quantitative protein interaction network for the ErbB receptors using protein microarrays. Jones et al. (2006). Nature.
Source: Direct interaction with 139 interactions from iRefIndex
Tags:
Defining the human deubiquitinating enzyme interaction landscape. Sowa et al. (2009). Cell.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 1,511 interactions from BioGRID
Source: Direct interaction with 41,955 interactions from iRefIndex
Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2. Cannavo et al. (2007). J Biol Chem.
Source: Direct interaction with 109 interactions from iRefIndex
Tags:
Source: Direct interaction with 28,821 interactions from BioGRID
Source: Direct interaction with 12,700 interactions from iRefIndex
Source: Direct interaction with 5,310 interactions from iRefIndex
Source: Direct interaction with 637 interactions from iRefIndex
Source: Direct interaction with 21,448 interactions from iRefIndex
RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers. de Hoog et al. (2004). Cell.
Source: Direct interaction with 220 interactions from iRefIndex
Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. Svendsen et al. (2009). Cell.
Source: Direct interaction with 233 interactions from iRefIndex
Tags:
Source: Direct interaction with 13,341 interactions from iRefIndex
An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Glatter et al. (2009). Mol Syst Biol.
Source: Direct interaction with 307 interactions from iRefIndex
Tags:
High-throughput mapping of a dynamic signaling network in mammalian cells. Barrios-Rodiles et al. (2005). Science.
Source: Direct interaction with 547 interactions from iRefIndex
Tags:
Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi. Chen et al. (2009). Proc Natl Acad Sci U S A.
Note: I2D predictions of protein protein interactions using Chen-Pawson-2009 Mus musculus data
Source: Direct interaction with 30 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 567 interactions from I2D
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Saccharomyces cerevisiae data
Source: Direct interaction with 13,434 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 1,196 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 15 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 3,001 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 16,074 interactions from I2D
A gene-coexpression network for global discovery of conserved genetic modules. Stuart et al. (2003). Science.
Source: 24,952 interactions from supplementary material
Tags:
High-quality binary protein interaction map of the yeast interactome network. Yu et al. (2008). Science.
Note: I2D predictions of protein protein interactions using Yu Gold Standard Saccharomyces cerevisiae data
Source: Direct interaction with 386 interactions from I2D
Tags:
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Rattus norvegicus data
Source: Direct interaction with 1,054 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Mus musculus data
Source: Direct interaction with 977 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Rattus norvegicus data
Source: Direct interaction with 574 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Mus musculus data
Source: Direct interaction with 3,422 interactions from I2D
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Mus musculus data
Source: Direct interaction with 288 interactions from I2D
Ontological visualization of protein-protein interactions. Drabkin et al. (2005). BMC Bioinformatics.
Note: I2D predictions of protein protein interactions using MGI Mus musculus data
Source: Direct interaction with 724 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 103 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Drosophila melanogaster data
Source: Direct interaction with 3,920 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Rattus norvegicus data
Source: Direct interaction with 556 interactions from I2D
Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network. Tewari et al. (2004). Mol Cell.
Note: I2D predictions of protein protein interactions usingTewari-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 18 interactions from I2D
Tags:
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Saccharomyces cerevisiae data
Source: Direct interaction with 1,543 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Caenorhabditis elegans data
Source: Direct interaction with 1,166 interactions from I2D
InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Lynn et al. (2008). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using INNATEDB Mus musculus data
Source: Direct interaction with 1,455 interactions from I2D
Tags:
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Caenorhabditis elegans data
Source: Direct interaction with 911 interactions from I2D
An in vivo map of the yeast protein interactome. Tarassov et al. (2008). Science.
Note: I2D predictions of protein protein interactions using Tarassov-Michnick-2008 Saccharomyces cerevisiae data
Source: Direct interaction with 441 interactions from I2D
Tags:
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Krogan et al. (2006). Nature.
Note: I2D predictions of protein protein interactions using Krogan-Greenblatt-2006 Saccharomyces cerevisiae data
Source: Direct interaction with 1,794 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Mus musculus data
Source: Direct interaction with 1,198 interactions from I2D
Source: Pearson correlation with 530,357 interactions from Pfam
Source: Pearson correlation with 488,822 interactions from InterPro
CKLF-like MARVEL transmembrane domain containing 1 [Source:HGNC Symbol;Acc:19172]
Functions:
Synonyms: ENSG00000089505; ENSP00000330061; ENSP00000331428; ENSP00000331494; ENSP00000337119; ENSP00000368804; ENSP00000368814; ENSP00000405729; ENSP00000431135; ENSP00000431303; ENSP00000431609; ENSP00000432387; ENSP00000432398; ENSP00000432687; ENSP00000433160; ENSP00000434434; ENSP00000435020; ENSP00000435208; ENSP00000435485; ENSP00000435755; ENSP00000435786; ENSP00000437079; ENSP00000443374; 113540; CMTM1; NP_443725; NP_851785; NP_851786; NP_851787; NP_851788; NP_851789; NP_851800; NP_851813; NM_052999; NM_181268; NM_181269; NM_181270; NM_181271; NM_181272; NM_181283; NM_181285; NM_181286; NM_181287; NM_181288; NM_181289; NM_181290; NM_181292; NM_181293; NM_181294; NM_181295; NM_181296; NM_181297; NM_181298; NM_181299; NM_181300; NM_181301; CKLFH; CKLFH1; CKLFH1a; CKLFSF1; CKLF1_HUMAN; Q8IZ96;
More at Entrez
G protein pathway suppressor 2 [Source:HGNC Symbol;Acc:4550]
Functions:
Synonyms: ENSG00000132522; ENSP00000319371; ENSP00000370104; ENSP00000379841; ENSP00000438697; 2874; GPS2; NP_004480; NM_004489; AMF-1; GPS2_HUMAN; Q13227;
More at Entrez
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Functions:
Synonyms: ENSG00000178226; ENSP00000268281; ENSP00000407160; 146547; PRSS36; NP_775773; NM_173502; FLJ90661; POLS2_HUMAN; Q5K4E3;
More at Entrez
dom-3 homolog Z (C. elegans) [Source:HGNC Symbol;Acc:2992]
Functions:
Synonyms: ENSG00000204348; ENSG00000206346; ENSG00000224313; ENSG00000225682; ENSG00000234798; ENSG00000236765; ENSP00000337759; ENSP00000364498; ENSP00000364505; ENSP00000372820; ENSP00000382818; ENSP00000382819; ENSP00000391123; ENSP00000391349; ENSP00000391532; ENSP00000394167; ENSP00000395262; ENSP00000400173; ENSP00000401315; ENSP00000406143; ENSP00000410404; ENSP00000411380; ENSP00000413860; ENSP00000415675; ENSP00000418632; ENSP00000419588; 1797; DOM3Z; NP_005501; NM_005510; DOM3L; NG6; DOM3Z_HUMAN; O77932;
More at Entrez
piwi-like 2 (Drosophila) [Source:HGNC Symbol;Acc:17644]
Functions:
Synonyms: ENSG00000197181; ENSP00000349208; ENSP00000406956; ENSP00000428267; 55124; PIWIL2; NP_001129193; NP_060538; NM_001135721; NM_018068; CT80; FLJ10351; HILI; mili; PIWIL1L; PIWL2_HUMAN; Q8TC59;
More at Entrez
sterile alpha motif domain containing 10 [Source:HGNC Symbol;Acc:16129]
Functions:
Synonyms: ENSG00000130590; ENSP00000358902; ENSP00000404839; 140700; SAMD10; NP_542188; NM_080621; C20orf136; dJ591C20; dJ591C20.7; Q9BYL1; SAM10_HUMAN;
More at Entrez
late cornified envelope 2A [Source:HGNC Symbol;Acc:29469]
Functions:
Synonyms: ENSG00000187173; ENSP00000357768; 353139; LCE2A; NP_848515; NM_178428; LEP9; LCE2A_HUMAN; Q5TA79;
More at Entrez
R3H domain containing-like [Source:HGNC Symbol;Acc:16249]
Functions:
Synonyms: ENSG00000101074; ENSP00000217043; 140902; R3HDML; NP_848586; NM_178491; dJ881L22.3; CRSPL_HUMAN; Q9H3Y0;
More at Entrez
mab-21-like 2 (C. elegans) [Source:HGNC Symbol;Acc:6758]
Functions:
Synonyms: ENSG00000181541; ENSP00000324701; 10586; MAB21L2; NP_006430; NM_006439; MB212_HUMAN; Q9Y586;
More at Entrez
interleukin 27 [Source:HGNC Symbol;Acc:19157]
Functions:
Synonyms: ENSG00000197272; ENSP00000349365; 246778; IL27; NP_663634; NM_145659; IL-27A; IL27A; IL27p28; IL30; MGC71873; IL27A_HUMAN; Q8NEV9;
More at Entrez
disrupted in renal carcinoma 1 [Source:HGNC Symbol;Acc:15760]
Functions:
Synonyms: ENSG00000174325; ENSP00000307860; 116093; DIRC1; NP_443184; NM_052952; DIRC1_HUMAN; Q969H9;
More at Entrez
abhydrolase domain containing 16B [Source:HGNC Symbol;Acc:16128]
Functions:
Synonyms: ENSG00000183260; ENSP00000358932; 140701; ABHD16B; NP_542189; NM_080622; C20orf135; dJ591C20.1; ABHGB_HUMAN; Q9H3Z7;
More at Entrez
GRB2-related adapter protein-like [Source:UniProtKB/Swiss-Prot;Acc:Q8TC17]
Functions:
Synonyms: ENSG00000189152; ENSG00000230197; ENSP00000402579; ENSP00000407609; ENSP00000410515; ENSP00000437409; 400581; AC007952.1; NP_001123250; NM_001129778; GRAPL; GRAPL_HUMAN; Q8TC17;
More at Entrez
zinc finger CCCH-type containing 14 [Source:HGNC Symbol;Acc:20509]
Functions:
Synonyms: ENSG00000100722; ENSP00000251037; ENSP00000251038; ENSP00000307025; ENSP00000327176; ENSP00000338002; ENSP00000352250; ENSP00000370059; ENSP00000377150; ENSP00000377164; ENSP00000384682; ENSP00000450451; ENSP00000450474; ENSP00000450823; ENSP00000450917; ENSP00000451007; ENSP00000451054; ENSP00000451389; ENSP00000451489; ENSP00000451530; ENSP00000451638; ENSP00000451941; ENSP00000452210; ENSP00000452370; ENSP00000452475; 79882; ZC3H14; NP_001153575; NP_001153576; NP_079100; NP_997543; NP_997544; NP_997545; NM_001160103; NM_001160104; NM_024824; NM_207660; NM_207661; NM_207662; FLJ11806; MSUT-2; NY-REN-37; UKp68; Q6PJT7; ZC3HE_HUMAN;
More at Entrez
RAN binding protein 3-like [Source:HGNC Symbol;Acc:26353]
Functions:
Synonyms: ENSG00000164188; ENSP00000296604; ENSP00000421149; ENSP00000421853; ENSP00000427147; 202151; RANBP3L; NP_001154901; NP_659437; NM_001161429; NM_145000; FLJ25422; Q86VV4; RNB3L_HUMAN;
More at Entrez
carnosine synthase 1 [Source:HGNC Symbol;Acc:29268]
Functions:
Synonyms: ENSG00000172508; ENSP00000308268; ENSP00000389009; ENSP00000401519; ENSP00000431670; ENSP00000438686; ENSP00000445385; 57571; CARNS1; NP_001159694; NP_065862; NM_001166222; NM_020811; ATPGD1; KIAA1394; A5YM72; CRNS1_HUMAN;
More at Entrez
cytoskeleton associated protein 2-like [Source:HGNC Symbol;Acc:26877]
Functions:
Synonyms: ENSG00000169607; ENSP00000305204; ENSP00000414834; ENSP00000438763; 150468; CKAP2L; NP_689728; NM_152515; FLJ40629; CKP2L_HUMAN; Q8IYA6;
More at Entrez
defensin, beta 121 [Source:HGNC Symbol;Acc:18101]
Functions:
Synonyms: ENSG00000204548; ENSP00000417128; 245934; DEFB121; NP_001011878; NP_001165303; NM_001011878; NM_001171832; DEFB-21; ESC42RELC; DB121_HUMAN; Q5J5C9;
More at Entrez
bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:1118]
Functions:
Synonyms: ENSG00000109743; ENSP00000265016; ENSP00000371783; ENSP00000420925; ENSP00000423357; ENSP00000424761; 683; BST1; NP_004325; NM_004334; CD157; BST1_HUMAN; Q10588;
More at Entrez
FXYD domain containing ion transport regulator 4 [Source:HGNC Symbol;Acc:4028]
Functions:
Synonyms: ENSG00000150201; ENSP00000363575; ENSP00000388004; 53828; FXYD4; NP_001171892; NP_775183; NM_001184963; NM_173160; FXYD4_HUMAN; P59646;
More at Entrez
REM2 and RAB-like small GTPase 1 [Source:HGNC Symbol;Acc:28127]
Functions:
Synonyms: ENSG00000132881; ENSP00000364749; ENSP00000406390; 79363; RSG1; NP_112169; NM_030907; C1orf89; MGC10731; RP4-733M16.4; Q9BU20; RSG1_HUMAN;
More at Entrez
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7D1C1D49B5AE16357914E60B8ADAA671.genemania