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Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number. Wang et al. (2006). Cancer Res.
Source: Pearson correlation with 231,830 interactions from GEO
Tags:
Multiclass cancer diagnosis using tumor gene expression signatures. Ramaswamy et al. (2001). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 226,615 interactions from supplementary material
Tags:
Genomic analysis reveals few genetic alterations in pediatric acute myeloid leukemia. Radtke et al. (2009). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 377,767 interactions from GEO
Tags:
Expression profiling of liposarcoma yields a multigene predictor of patient outcome and identifies genes that contribute to liposarcomagenesis. Gobble et al. (2011). Cancer Res.
Source: Pearson correlation with 449,507 interactions from GEO
Tags:
Gene expression classifiers for relapse-free survival and minimal residual disease improve risk classification and outcome prediction in pediatric B-precursor acute lymphoblastic leukemia. Kang et al. (2010). Blood.
Source: Pearson correlation with 549,783 interactions from GEO
Tags:
A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling. Hummel et al. (2006). N Engl J Med.
Source: Pearson correlation with 466,765 interactions from GEO
Tags:
Gene signatures of progression and metastasis in renal cell cancer. Jones et al. (2005). Clin Cancer Res.
Source: Pearson correlation with 365,428 interactions from GEO
Tags:
Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Bild et al. (2006). Nature.
Note: One of 3 datasets produced from this publication.
Source: Pearson correlation with 254,105 interactions from GEO
Tags:
Regional variation in gene expression in the healthy colon is dysregulated in ulcerative colitis. Noble et al. (2008). Gut.
Source: Pearson correlation with 603,016 interactions from GEO
The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle. Wu et al. (2007). Endocrine.
Source: Pearson correlation with 223,988 interactions from GEO
Tags:
Gene expression analysis of soft tissue sarcomas: characterization and reclassification of malignant fibrous histiocytoma. Nakayama et al. (2007). Mod Pathol.
Source: Pearson correlation with 361,398 interactions from GEO
Tags:
Tumor cell gene expression changes following short-term in vivo exposure to single agent chemotherapeutics are related to survival in multiple myeloma. Burington et al. (2008). Clin Cancer Res.
Source: Pearson correlation with 266,464 interactions from GEO
Tags:
Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells. Burczynski et al. (2006). J Mol Diagn.
Source: Pearson correlation with 419,356 interactions from GEO
Transcriptome signature of resistance exercise adaptations: mixed muscle and fiber type specific profiles in young and old adults. Raue et al. (2012). J Appl Physiol.
Source: Pearson correlation with 483,849 interactions from GEO
Toxicity from radiation therapy associated with abnormal transcriptional responses to DNA damage. Rieger et al. (2004). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 220,846 interactions from GEO
Tags:
Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment. Arijs et al. (2009). PLoS One.
Source: Pearson correlation with 570,210 interactions from GEO
Tags:
Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. Peng et al. (2009). BMC Genomics.
Source: Pearson correlation with 349,954 interactions from GEO
Tags:
Gene expression changes in the course of normal brain aging are sexually dimorphic. Berchtold et al. (2008). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 507,933 interactions from GEO
Tags:
Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis. Toedter et al. (2011). Am J Gastroenterol.
Source: Pearson correlation with 572,082 interactions from GEO
Tags:
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Perou et al. (1999). Proc Natl Acad Sci U S A.
Source: Pearson correlation with 50,804 interactions from supplementary material
Tags:
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Johnson et al. (2003). Science.
Source: Pearson correlation with 426,934 interactions from GEO
Tags:
A comprehensive transcript index of the human genome generated using microarrays and computational approaches. Schadt et al. (2004). Genome Biol.
Note: Predicted transcript array
Source: Pearson correlation with 60,454 interactions from GEO
Source: Direct interaction with 171 interactions from iRefIndex
Source: Direct interaction with 345 interactions from BioGRID
A human functional protein interaction network and its application to cancer data analysis. Wu et al. (2010). Genome Biol.
Source: 78,448 interactions from supplementary material
Tags:
Source: Direct interaction with 24,924 interactions from Pathway Commons
Source: Direct interaction with 937 interactions from Pathway Commons
Source: Direct interaction with 10,118 interactions from Pathway Commons
Source: Direct interaction with 598 interactions from Pathway Commons
Source: Direct interaction with 685 interactions from Pathway Commons
Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes. Behzadnia et al. (2007). EMBO J.
Source: Direct interaction with 101 interactions from iRefIndex
Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. Kneissl et al. (2003). J Mol Biol.
Source: Direct interaction with 83 interactions from iRefIndex
Tags:
Proteomics analysis identifies phosphorylation-dependent alpha-synuclein protein interactions. McFarland et al. (2008). Mol Cell Proteomics.
Source: Direct interaction with 152 interactions from iRefIndex
Tags:
Systematic analysis of human protein complexes identifies chromosome segregation proteins. Hutchins et al. (2010). Science.
Source: Direct interaction with 141 interactions from iRefIndex
Tags:
Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. Jeronimo et al. (2007). Mol Cell.
Source: Direct interaction with 660 interactions from iRefIndex
Tags:
Self-assembling protein microarrays. Ramachandran et al. (2004). Science.
Source: Direct interaction with 119 interactions from iRefIndex
A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein. Goudreault et al. (2009). Mol Cell Proteomics.
Source: Direct interaction with 242 interactions from iRefIndex
Tags:
A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. Sato et al. (2004). Mol Cell.
Source: Direct interaction with 235 interactions from iRefIndex
Tags:
Large-scale structural analysis of the classical human protein tyrosine phosphatome. Barr et al. (2009). Cell.
Source: Direct interaction with 177 interactions from iRefIndex
Source: Direct interaction with 385 interactions from iRefIndex
A quantitative protein interaction network for the ErbB receptors using protein microarrays. Jones et al. (2006). Nature.
Source: Direct interaction with 139 interactions from iRefIndex
Tags:
Defining the human deubiquitinating enzyme interaction landscape. Sowa et al. (2009). Cell.
Note: One of 2 datasets produced from this publication.
Source: Direct interaction with 1,511 interactions from BioGRID
Source: Direct interaction with 41,955 interactions from iRefIndex
Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2. Cannavo et al. (2007). J Biol Chem.
Source: Direct interaction with 109 interactions from iRefIndex
Tags:
Source: Direct interaction with 28,821 interactions from BioGRID
Source: Direct interaction with 12,700 interactions from iRefIndex
Source: Direct interaction with 5,310 interactions from iRefIndex
Source: Direct interaction with 637 interactions from iRefIndex
Source: Direct interaction with 21,448 interactions from iRefIndex
RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers. de Hoog et al. (2004). Cell.
Source: Direct interaction with 220 interactions from iRefIndex
Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. Svendsen et al. (2009). Cell.
Source: Direct interaction with 233 interactions from iRefIndex
Tags:
Source: Direct interaction with 13,341 interactions from iRefIndex
An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Glatter et al. (2009). Mol Syst Biol.
Source: Direct interaction with 307 interactions from iRefIndex
Tags:
High-throughput mapping of a dynamic signaling network in mammalian cells. Barrios-Rodiles et al. (2005). Science.
Source: Direct interaction with 547 interactions from iRefIndex
Tags:
Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi. Chen et al. (2009). Proc Natl Acad Sci U S A.
Note: I2D predictions of protein protein interactions using Chen-Pawson-2009 Mus musculus data
Source: Direct interaction with 30 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 567 interactions from I2D
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Saccharomyces cerevisiae data
Source: Direct interaction with 13,434 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 1,196 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 15 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 3,001 interactions from I2D
Comparative assessment of large-scale data sets of protein-protein interactions. von Mering et al. (2002). Nature.
Note: I2D predictions of protein protein interactions using vonMering-Bork-2002 Saccharomyces cerevisiae data
Source: Direct interaction with 16,074 interactions from I2D
A gene-coexpression network for global discovery of conserved genetic modules. Stuart et al. (2003). Science.
Source: 24,952 interactions from supplementary material
Tags:
High-quality binary protein interaction map of the yeast interactome network. Yu et al. (2008). Science.
Note: I2D predictions of protein protein interactions using Yu Gold Standard Saccharomyces cerevisiae data
Source: Direct interaction with 386 interactions from I2D
Tags:
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Rattus norvegicus data
Source: Direct interaction with 1,054 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Mus musculus data
Source: Direct interaction with 977 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Rattus norvegicus data
Source: Direct interaction with 574 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Mus musculus data
Source: Direct interaction with 3,422 interactions from I2D
BioGRID: a general repository for interaction datasets. Stark et al. (2006). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using BioGRID Mus musculus data
Source: Direct interaction with 288 interactions from I2D
Ontological visualization of protein-protein interactions. Drabkin et al. (2005). BMC Bioinformatics.
Note: I2D predictions of protein protein interactions using MGI Mus musculus data
Source: Direct interaction with 724 interactions from I2D
A map of the interactome network of the metazoan C. elegans. Li et al. (2004). Science.
Note: I2D predictions of protein protein interactions using Li-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 103 interactions from I2D
The IntAct molecular interaction database in 2010. Aranda et al. (2010). Nucleic Acids Res.
Note: I2D predictions of protein protein interactions using IntAct Drosophila melanogaster data
Source: Direct interaction with 3,920 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Rattus norvegicus data
Source: Direct interaction with 556 interactions from I2D
Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network. Tewari et al. (2004). Mol Cell.
Note: I2D predictions of protein protein interactions usingTewari-Vidal-2004 Caenorhabditis elegans data
Source: Direct interaction with 18 interactions from I2D
Tags:
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Saccharomyces cerevisiae data
Source: Direct interaction with 1,543 interactions from I2D
MINT: a Molecular INTeraction database. Zanzoni et al. (2002). FEBS Lett.
Note: I2D predictions of protein protein interactions using MINT Caenorhabditis elegans data
Source: Direct interaction with 1,166 interactions from I2D
InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Lynn et al. (2008). Mol Syst Biol.
Note: I2D predictions of protein protein interactions using INNATEDB Mus musculus data
Source: Direct interaction with 1,455 interactions from I2D
Tags:
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Caenorhabditis elegans data
Source: Direct interaction with 911 interactions from I2D
An in vivo map of the yeast protein interactome. Tarassov et al. (2008). Science.
Note: I2D predictions of protein protein interactions using Tarassov-Michnick-2008 Saccharomyces cerevisiae data
Source: Direct interaction with 441 interactions from I2D
Tags:
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Krogan et al. (2006). Nature.
Note: I2D predictions of protein protein interactions using Krogan-Greenblatt-2006 Saccharomyces cerevisiae data
Source: Direct interaction with 1,794 interactions from I2D
BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bader et al. (2000). Bioinformatics.
Note: I2D predictions of protein protein interactions using BIND Mus musculus data
Source: Direct interaction with 1,198 interactions from I2D
Source: Pearson correlation with 530,357 interactions from Pfam
Source: Pearson correlation with 488,822 interactions from InterPro
ankyrin repeat and sterile alpha motif domain containing 1B [Source:HGNC Symbol;Acc:24600]
Functions:
Synonyms: ENSG00000185046; ENSP00000331256; ENSP00000331381; ENSP00000332683; ENSP00000345510; ENSP00000384765; ENSP00000443906; ENSP00000447312; ENSP00000447784; ENSP00000447839; ENSP00000447999; ENSP00000448203; ENSP00000448205; ENSP00000448512; ENSP00000448744; ENSP00000448993; ENSP00000449629; ENSP00000449894; ENSP00000450015; ENSP00000452523; 56899; ANKS1B; NP_001190994; NP_001190995; NP_001190996; NP_001190997; NP_001190998; NP_001190999; NP_001191008; NP_001191009; NP_001191010; NP_064525; NP_690001; NP_858056; NM_001204065; NM_001204066; NM_001204067; NM_001204068; NM_001204069; NM_001204070; NM_001204079; NM_001204080; NM_001204081; NM_020140; NM_152788; NM_181670; AIDA-1; ANKS2; cajalin-2; EB-1; ANS1B_HUMAN; Q7Z6G8;
More at Entrez
v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) [Source:HGNC Symbol;Acc:3432]
Functions:
Synonyms: ENSG00000178568; ENSP00000260943; ENSP00000342235; ENSP00000385565; ENSP00000403204; ENSP00000405564; 2066; ERBB4; NP_001036064; NP_005226; NM_001042599; NM_005235; HER4; p180erbB4; ERBB4_HUMAN; Q15303;
More at Entrez
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:6694]
Functions:
Synonyms: ENSG00000081479; ENSP00000263816; ENSP00000409813; ENSP00000438157; 4036; LRP2; NP_004516; NM_004525; GP330; LRP2_HUMAN; P98164;
More at Entrez
FXYD domain containing ion transport regulator 7 [Source:HGNC Symbol;Acc:4034]
Functions:
Synonyms: ENSG00000221946; ENSP00000270310; ENSP00000397564; 53822; FXYD7; NP_071289; NM_022006; FXYD7_HUMAN; P58549;
More at Entrez
family with sequence similarity 134, member B [Source:HGNC Symbol;Acc:25964]
Functions:
Synonyms: ENSG00000154153; ENSP00000304642; ENSP00000382691; ENSP00000425089; 54463; FAM134B; NP_001030022; NP_061873; NM_001034850; NM_019000; FLJ20152; JK-1; JK1; F134B_HUMAN; Q9H6L5;
More at Entrez
chromosome 7 open reading frame 62 [Source:HGNC Symbol;Acc:22402]
Functions:
Synonyms: ENSG00000164645; ENSP00000297203; 219557; C7orf62; NP_689919; NM_152706; MGC26647; CG062_HUMAN; Q8TBZ9;
More at Entrez
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Functions:
Synonyms: ENSG00000076067; ENSP00000262031; ENSP00000440442; ENSP00000443486; ENSP00000447426; ENSP00000447699; ENSP00000449678; ENSP00000450127; 5939; RBMS2; NP_002889; NM_002898; SCR3; Q15434; RBMS2_HUMAN;
More at Entrez
solute carrier family 25 (mitochondrial carrier), member 18 [Source:HGNC Symbol;Acc:10988]
Functions:
Synonyms: ENSG00000182902; ENSP00000329033; ENSP00000382710; 83733; SLC25A18; NP_113669; NM_031481; GC2; GHC2_HUMAN; Q9H1K4;
More at Entrez
mitogen-activated protein kinase 8 interacting protein 1 [Source:HGNC Symbol;Acc:6882]
Functions:
Synonyms: ENSG00000121653; ENSP00000241014; ENSP00000378991; 9479; MAPK8IP1; NP_005447; NM_005456; IB1; JIP-1; JIP1; PRKM8IP; JIP1_HUMAN; Q9UQF2;
More at Entrez
TBC1 domain family, member 30 [Source:HGNC Symbol;Acc:29164]
Functions:
Synonyms: ENSG00000111490; ENSP00000229088; ENSP00000394004; ENSP00000415850; ENSP00000439897; ENSP00000440207; ENSP00000440640; ENSP00000440787; ENSP00000442442; 23329; TBC1D30; NP_056094; NM_015279; KIAA0984; Q9Y2I9; TBC30_HUMAN;
More at Entrez
interleukin 19 [Source:HGNC Symbol;Acc:5990]
Functions:
Synonyms: ENSG00000142224; ENSP00000270218; ENSP00000343000; 29949; IL19; NP_037503; NP_715639; NM_013371; NM_153758; IL-10C; IL-19; MDA1; NG.1; ZMDA1; IL19_HUMAN; Q9UHD0;
More at Entrez
solute carrier family 22 (organic anion transporter), member 7 [Source:HGNC Symbol;Acc:10971]
Functions:
Synonyms: ENSG00000137204; ENSP00000361655; ENSP00000361666; ENSP00000361670; ENSP00000393836; ENSP00000411818; ENSP00000416052; ENSP00000434707; 10864; SLC22A7; NP_006663; NP_696961; NM_006672; NM_153320; NLT; OAT2; Q9Y694; S22A7_HUMAN;
More at Entrez
olfactory receptor, family 10, subfamily H, member 1 [Source:HGNC Symbol;Acc:8172]
Functions:
Synonyms: ENSG00000186723; ENSP00000335596; 26539; OR10H1; NP_039228; NM_013940; O10H1_HUMAN; Q9Y4A9;
More at Entrez
parathyroid hormone 2 receptor [Source:HGNC Symbol;Acc:9609]
Functions:
Synonyms: ENSG00000144407; ENSP00000272847; ENSP00000393930; 5746; PTH2R; NP_005039; NM_005048; PTHR2; P49190; PTH2R_HUMAN;
More at Entrez
neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:19311]
Functions:
Synonyms: ENSG00000151322; ENSP00000319610; ENSP00000344158; ENSP00000348460; ENSP00000350446; ENSP00000446700; ENSP00000447213; ENSP00000447858; ENSP00000448373; ENSP00000448450; ENSP00000448916; ENSP00000449542; ENSP00000450392; 64067; NPAS3; NP_001158221; NP_001159365; NP_071406; NP_775182; NM_001164749; NM_001165893; NM_022123; NM_173159; bHLHe12; MOP6; PASD6; NPAS3_HUMAN; Q8IXF0;
More at Entrez
low density lipoprotein receptor-related protein 11 [Source:HGNC Symbol;Acc:16936]
Functions:
Synonyms: ENSG00000120256; ENSP00000239367; ENSP00000356338; ENSP00000440196; 84918; LRP11; NP_116221; NM_032832; bA350J20.3; MANSC3; LRP11_HUMAN; Q86VZ4;
More at Entrez
interleukin 1 receptor accessory protein-like 1 [Source:HGNC Symbol;Acc:5996]
Functions:
Synonyms: ENSG00000169306; ENSP00000305200; ENSP00000368278; 11141; IL1RAPL1; NP_055086; NM_014271; IL1R8; IL1RAPL; MRX10; MRX21; MRX34; OPHN4; TIGIRR-2; IRPL1_HUMAN; Q9NZN1;
More at Entrez
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 [Source:HGNC Symbol;Acc:9248]
Functions:
Synonyms: ENSG00000143847; ENSP00000272198; ENSP00000295706; ENSP00000356209; ENSP00000400379; ENSP00000402331; ENSP00000402576; 8497; PPFIA4; NP_055868; NM_015053; LIPA4_HUMAN; O75335;
More at Entrez
zinc finger, B-box domain containing [Source:HGNC Symbol;Acc:26245]
Functions:
Synonyms: ENSG00000169064; ENSP00000305065; ENSP00000376517; ENSP00000376519; ENSP00000376520; ENSP00000390232; ENSP00000417088; ENSP00000417678; ENSP00000418861; ENSP00000419264; ENSP00000419307; 79740; ZBBX; NP_001186130; NP_001186131; NP_078963; NM_001199201; NM_001199202; NM_024687; FLJ23049; A8MT70; ZBBX_HUMAN;
More at Entrez
chromosome 3 open reading frame 14 [Source:HGNC Symbol;Acc:25024]
Functions:
Synonyms: ENSG00000114405; ENSP00000232519; ENSP00000418086; ENSP00000419937; ENSP00000419977; ENSP00000438275; 57415; C3orf14; NP_065736; NM_020685; HT021; CC014_HUMAN; Q9HBI5;
More at Entrez
growth associated protein 43 [Source:HGNC Symbol;Acc:4140]
Functions:
Synonyms: ENSG00000172020; ENSP00000305010; ENSP00000377372; 2596; GAP43; NP_001123536; NP_002036; NM_001130064; NM_002045; B-50; PP46; NEUM_HUMAN; P17677;
More at Entrez
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9362CCCE33272A7E2F12B64C0F392F8B.genemania